Monday, February 20, 2012

Russians regenerate flowering plant from 30,000-year-old frozen burrow of Ice Age squirrel

http://www.washingtonpost.com/world/europe/russians-regenerate-flowering-plant-from-30000-year-old-frozen-burrow-of-ice-age-squirrel/2012/02/20/gIQAB1ejPR_story.html

MOSCOW — It was an Ice Age squirrel’s treasure chamber, a burrow containing fruit and seeds that had been stuck in the Siberian permafrost for over 30,000 years. From the fruit tissues, a team of Russian scientists managed to resurrect an entire plant in a pioneering experiment that paves the way for the revival of other species.
The Silene stenophylla is the oldest plant ever to be regenerated, the researchers said, and it is fertile, producing white flowers and viable seeds.

(Institute of Cell Biophysics of the Russian Academy of Sciences/via AP) - A Sylene stenophylla plant has been regenerated from tissue of fossil fruit found in a squirrel burrow that had been stuck in Siberian permafrost for over 30,000 years. It is the oldest plant ever to be regenerated and it is fertile, producing white flowers and viable seeds.
The experiment proves that permafrost serves as a natural depository for ancient life forms, said the Russian researchers, who published their findings in Tuesday’s issue of “Proceedings of the National Academy of Sciences” of the United States.
“We consider it essential to continue permafrost studies in search of an ancient genetic pool, that of pre-existing life, which hypothetically has long since vanished from the earth’s surface,” the scientists said in the article.
Canadian researchers had earlier regenerated some significantly younger plants from seeds found in burrows.
Svetlana Yashina of the Institute of Cell Biophysics of the Russian Academy Of Sciences, who led the regeneration effort, said the revived plant looked very similar to its modern version, which still grows in the same area in northeastern Siberia.
“It’s a very viable plant, and it adapts really well,” she told The Associated Press in a telephone interview from the Russian town of Pushchino where her lab is located.
She voiced hope the team could continue its work and regenerate more plant species.
The Russian research team recovered the fruit after investigating dozens of fossil burrows hidden in ice deposits on the right bank of the lower Kolyma River in northeastern Siberia, the sediments dating back 30,000-32,000 years.
The sediments were firmly cemented together and often totally filled with ice, making any water infiltration impossible — creating a natural freezing chamber fully isolated from the surface.
“The squirrels dug the frozen ground to build their burrows, which are about the size of a soccer ball, putting in hay first and then animal fur for a perfect storage chamber,” said Stanislav Gubin, one of the authors of the study, who spent years rummaging through the area for squirrel burrows. “It’s a natural cryobank.”
The burrows were located 125 feet (38 meters) below the present surface in layers containing bones of large mammals, such as mammoth, wooly rhinoceros, bison, horse and deer.
Gubin said the study has demonstrated that tissue can survive ice conservation for tens of thousands of years, opening the way to the possible resurrection of Ice Age mammals.
“If we are lucky, we can find some frozen squirrel tissue,” Gubin told the AP. “And this path could lead us all the way to mammoth.”
Japanese scientists are already searching in the same area for mammoth remains, but Gubin voiced hope that the Russians will be the first to find some frozen animal tissue that could be used for regeneration.
“It’s our land, we will try to get them first,” he said.
Copyright 2012 The Associated Press. All rights reserved. This material may not be published, broadcast, rewritten or redistributed.

 http://www.nytimes.com/2012/02/21/science/new-life-from-an-arctic-flower-that-died-32000-years-ago.html?_r=1

Living plants have been generated from the fruit of a little arctic flower, the narrow-leafed campion, that died 32,000 years ago, a team of Russian scientists reports. The fruit was stored by an arctic ground squirrel in its burrow on the tundra of northeastern Siberia and lay permanently frozen until excavated by scientists a few years ago.
Svetlana Yashina
OLD DNA A plant has been generated from the fruit of the narrow-leafed campion. It is the oldest plant by far to be grown from ancient tissue.
This would be the oldest plant by far that has ever been grown from ancient tissue. The present record is held by a date palm grown from a seed some 2,000 years old that was recovered from the ancient fortress of Masada in Israel.
Seeds and certain cells can last a long term under the right conditions, but many claims of extreme longevity have failed on closer examination, and biologists are likely to greet this claim, too, with reserve until it can be independently confirmed. Tales of wheat grown from seeds in the tombs of the pharaohs have long been discredited. Lupines were germinated from seeds in a 10,000-year-old lemming burrow found by a gold miner in the Yukon. But the seeds, later dated by the radiocarbon method, turned out to be modern contaminants.
Despite this unpromising background, the new claim is supported by a firm radiocarbon date. A similar avenue of inquiry into the deep past, the field of ancient DNA, was at first discredited after claims of retrieving dinosaur DNA proved erroneous, but with improved methods has produced spectacular results like the reconstitution of the Neanderthal genome.
The new report is by a team led by Svetlana Yashina and David Gilichinsky of the Russian Academy of Sciences research center at Pushchino, near Moscow, and appears in Tuesday’s issue of The Proceedings of the National Academy of Sciences of the United States of America.
“This is an amazing breakthrough,” said Grant Zazula of the Yukon Paleontology Program at Whitehorse in Yukon Territory, Canada. “I have no doubt in my mind that this is a legitimate claim.” It was Dr. Zazula who showed that the apparently ancient lupine seeds found by the Yukon gold miner were in fact modern.
But the Russians’ extraordinary report is likely to provoke calls for more proof. “It’s beyond the bounds of what we’d expect,” said Alastair Murdoch, an expert on seed viability at the University of Reading in England. When poppy seeds are kept at minus 7 degrees Celsius, the temperature the Russians reported for the campions, after only 160 years just 2 percent of the seeds will be able to germinate, Dr. Murdoch noted.
The Russian researchers excavated ancient squirrel burrows exposed on the bank of the lower Kolyma River, an area thronged with mammoth and woolly rhinoceroses during the last ice age. Soon after being dug, the burrows were sealed with windblown earth, buried under 125 feet of sediment and permanently frozen at minus 7 degrees Celsius.
Some of the storage chambers in the burrows contain more than 600,000 seeds and fruits. Many are from a species that most closely resembles a plant found today, the narrow-leafed campion (Silene stenophylla).
Working with a burrow from the site called Duvanny Yar, the Russian researchers tried to germinate the campion seeds, but failed. They then took cells from the placenta, the organ in the fruit that produces the seeds. They thawed out the cells and grew them in culture dishes into whole plants.
Many plants can be propagated from a single adult cell, and this cloning procedure worked with three of the placentas, the Russian researchers report. They grew 36 ancient plants, which appeared identical to the present day narrow-leafed campion until they flowered, when they produced narrower and more splayed-out petals. Seeds from the ancient plants germinated with 100 percent success, compared with 90 percent for seeds from living campions.
The Russian team says it obtained a radiocarbon date of 31,800 years from seeds attached to the same placenta from which the living plants were propagated.
The researchers suggest that special circumstances may have contributed to the remarkable longevity of the campion plant cells. Squirrels construct their larders next to permafrost to keep seeds cool during the arctic summers, so the fruits would have been chilled from the start. The fruit’s placenta contains high levels of sucrose and phenols, which are good antifreeze agents.
The Russians measured the ground radioactivity at the site, which can damage DNA, and say the amount of gamma radiation the campion fruit accumulated over 30,000 years is not much higher than that reported for a 1,300-year-old sacred lotus seed, from which a plant was successfully germinated.
The Russian article was edited by Buford Price of the University of California, Berkeley. Dr. Price, a physicist, chose two reviewers to help him. But neither he nor they are plant biologists. “I know nothing about plants,” he said. Ann Griswold, a spokeswoman for the National Academy of Sciences, said the paper had been seen by an editorial board member who is a plant biologist.
Tragedy has now struck the Russian team. Dr. Gilichinksy, its leader, was hospitalized with an asthma attack and unable to respond to questions, his daughter Yana said on Friday. On Saturday, Dr. Price reported that Dr. Gilichinsky had died of a heart attack.
Eske Willerslev, an expert on ancient DNA at the University of Copenhagen, said the finding was “plausible in principle,” given the conditions in permafrost. But the claim depends on the radiocarbon date being correct: “It’s all resting on that — if there’s something wrong there it can all fall part.”
If the ancient campions are the ancestors of the living plants, this family relationship should be evident in their DNA. Dr. Willerslev said that the Russian researchers should analyze the DNA of their specimens and prove that this is the case. However, this is not easy to do with plants whose genetics are not well studied, Dr. Willerslev said.
If the claim is true, then scientists should be able to study evolution in real time by comparing the ancient and living campions. Possibly other ancient species can be resurrected from the permafrost, including plants that have long been extinct.